Plants : Oryza sativa

WGS Analysis tools

Division: Plants

Species name: Oryza sativa Japonica

Assembly: IRGSP-1.0

CDS quantity in database: 42355

CDNA quantity in database: 44761

3' UTR quantity in database: 35568

5' UTR quantity in database: 34896

Last update: 2023-01-28

Data source: Ensembl

Lineage:

Eukaryota (43) → Viridiplantae (40) → Streptophyta (38) → Streptophytina (38) → Embryophyta (38) → Tracheophyta (37) → Euphyllophyta (36) → Spermatophyta (36) → Magnoliophyta (36) → Mesangiospermae (35) → Liliopsida (20) → Petrosaviidae (20) → commelinids (20) → Poales (19) → Poaceae (19) → BOP clade (16) → Oryzoideae (11) → Oryzeae (11) → Oryzinae (11) → Oryza (10)


Sequence properties GOGene Ontology Annotations CDS DataSeq distr Codon Usage AminoAcid Position Codon Position CDS Length CpG-Island in CDS GC-Content in CDS Nucleotide by Position in CDS Adenine in CDS Cytosine in CDS Guanine in CDS Thymine in CDS Gene Names Transcript names Chromosome Strand Motifs K-Mers CDNA DataCDNA Length CpG-Island in CDNA GC-Content in CNDA Nucleotide by Position in CDNA Adenine in CDNA Cytosine in CDNA Guanine in CDNA Thymine in CDNA Gene Names Transcript names Chromosome Strand Motifs K-Mers 5' UTR Data5' UTR Length CpG-Island in 5' UTR GC-Content in 5' UTR Nucleotide by Position in 5' UTR Adenine in 5' UTR Cytosine in 5' UTR Guanine in 5' UTR Thymine in 5' UTR Gene Names Transcript names Chromosome Strand Motifs K-Mers 3' UTR Data3' UTR Length CpG-Island in 3' UTR GC-Content in 3' UTR Nucleotide by Position in 3' UTR Adenine in 3' UTR Cytosine in 3' UTR Guanine in 3' UTR Thymine in 3' UTR Gene Names Transcript names Chromosome Strand Motifs K-Mers
Please cite: JetGene: Internet Resource for Analysis of Regulatory Regions or Nucleotide Contexts in Differentially Translated Plant Transcripts.
N. S. Sadovskaya, O. N. Mustafaev, A. A. Tyurin, I. V. Deineko & I. V. Goldenkova-Pavlova
Russian Journal of Plant Physiology volume 68, pages 633–640 (2021)