Fungi : Botrytis cinerea

CpG-Island in CDS

Sequence Distribution depending on CpG-Island concentration in CDS
Chart type: Bar (Switch to line)

Sequence region to calculate data (%)




Sequence Region (%): From to

Block size:

Values interval to calculate data




Values: From to




Genome statistics
Sequence count
Genome total13749
Filtered set13749 (no filters used)
Correlation1
View sequences in FASTA
#CpG-Island concentration (%)In GenomeIn Selected Set
1 088
2 177
3 2117117
4 314141414
5 460236023
6 543424342
7 612551255
8 7393393
9 8144144
10 93131
11 101212
12 1111
13 1211
14 1411

 
Sequence properties CDS DataSeq distr Codon Usage AminoAcid Position Codon Position CDS Length CpG-Island in CDS GC-Content in CDS Nucleotide by Position in CDS Adenine in CDS Cytosine in CDS Guanine in CDS Thymine in CDS Gene Names Transcript names Chromosome Strand Motifs K-Mers CDNA DataCDNA Length CpG-Island in CDNA GC-Content in CNDA Nucleotide by Position in CDNA Adenine in CDNA Cytosine in CDNA Guanine in CDNA Thymine in CDNA Gene Names Transcript names Chromosome Strand Motifs K-Mers 5' UTR Data5' UTR Length CpG-Island in 5' UTR GC-Content in 5' UTR Nucleotide by Position in 5' UTR Adenine in 5' UTR Cytosine in 5' UTR Guanine in 5' UTR Thymine in 5' UTR Gene Names Transcript names Chromosome Strand Motifs K-Mers 3' UTR Data3' UTR Length CpG-Island in 3' UTR GC-Content in 3' UTR Nucleotide by Position in 3' UTR Adenine in 3' UTR Cytosine in 3' UTR Guanine in 3' UTR Thymine in 3' UTR Gene Names Transcript names Chromosome Strand Motifs K-Mers
Please cite: JetGene: Internet Resource for Analysis of Regulatory Regions or Nucleotide Contexts in Differentially Translated Plant Transcripts.
N. S. Sadovskaya, O. N. Mustafaev, A. A. Tyurin, I. V. Deineko & I. V. Goldenkova-Pavlova
Russian Journal of Plant Physiology volume 68, pages 633–640 (2021)