| Vicugna pacos | Alpaca | 11806 | 12704 | 0 | 0 |
| Poecilia formosa | Amazon molly | 30898 | 30958 | 19715 | 19309 |
| Anolis carolinensis | Anole lizard (green anole) | 32972 | 33798 | 13439 | 15114 |
| Dasypus novemcinctus | Armadillo (nine-banded armadillo) | 26551 | 28051 | 12047 | 11025 |
| Otolemur garnettii | Bushbaby (small-eared galago) | 19986 | 21289 | 3893 | 4084 |
| Caenorhabditis elegans | Caenorhabditis elegans | 31865 | 34689 | 21906 | 24046 |
| Carlito syrichta | Carlito syrichta | 31791 | 32328 | 7970 | 9103 |
| Felis catus | Cat (domestic cat) | 40302 | 40796 | 19786 | 19347 |
| Astyanax mexicanus | Cave fish (Blind cave fish) | 40688 | 40730 | 18111 | 16389 |
| Cavia aperea | Cavia aperea | 18698 | 18896 | 0 | 0 |
| Gallus gallus | Chicken | 28444 | 28756 | 18595 | 17414 |
| Pan troglodytes | Chimpanzee | 49949 | 50434 | 20672 | 20528 |
| Chinchilla lanigera | Chinchilla lanigera | 25983 | 26265 | 15271 | 14514 |
| Pelodiscus sinensis | Chinese softshell turtle | 20669 | 20766 | 10483 | 10380 |
| Ciona intestinalis | C.intestinalis (Sea squirt Ciona intestinalis) | 17302 | 17329 | 13632 | 12148 |
| Gadus morhua | Cod (Atlantic cod) | 62247 | 62456 | 0 | 0 |
| Latimeria chalumnae | Coelacanth | 23601 | 23742 | 9125 | 8962 |
| Bos taurus | Cow (cattle) | 37538 | 38030 | 23403 | 21400 |
| Cricetulus griseus crigri | Cricetulus griseus | 26985 | 27431 | 10399 | 10759 |
| Cricetulus griseus chok1gshd | Cricetulus griseus | 28327 | 28433 | 6182 | 5948 |
| Ciona savignyi | C.savignyi (Sea squirt Ciona savignyi) | 20155 | 20371 | 11390 | 11645 |
| Canis familiaris | Dog | 25157 | 26107 | 10740 | 9940 |
| Tursiops truncatus | Dolphin (bottlenosed dolphin) | 16611 | 17536 | 0 | 0 |
| Anas platyrhynchos | Duck (mallard) | 27233 | 27688 | 14377 | 13493 |
| Loxodonta africana | Elephant (African savanna elephant) | 25635 | 26203 | 0 | 0 |
| Mustela putorius furo | Ferret (Domestic ferret) | 20062 | 20349 | 11074 | 9605 |
| Ficedula albicollis | Flycatcher (Collared flycatcher) | 29825 | 29888 | 18409 | 18802 |
| Drosophila melanogaster | Fruitfly (fruit fly) | 30719 | 31089 | 30100 | 30211 |
| Takifugu rubripes | Fugu (torafugu) | 52243 | 53059 | 0 | 0 |
| Fukomys damarensis | Fukomys damarensis | 23413 | 23670 | 11060 | 11271 |
| Nomascus leucogenys | Gibbon (Northern white-cheeked gibbon) | 40527 | 41094 | 12860 | 13286 |
| Gorilla gorilla | Gorilla (Western Lowland Gorilla) | 45194 | 45716 | 16835 | 17276 |
| Cavia porcellus | Guinea Pig (domestic guinea pig) | 25582 | 25824 | 13608 | 13104 |
| Erinaceus europaeus | Hedgehog (western European hedgehog) | 14605 | 15996 | 0 | 0 |
| Heterocephalus glaber female | Heterocephalus glaber | 28984 | 29620 | 14249 | 13915 |
| Heterocephalus glaber male | Heterocephalus glaber | 28099 | 28658 | 11171 | 10757 |
| Equus caballus | Horse | 74469 | 74894 | 0 | 0 |
| Homo sapiens | Human | 122614 | 207249 | 0 | 0 |
| Procavia capensis | Hyrax (cape rock hyrax) | 16114 | 17234 | 0 | 0 |
| Jaculus jaculus | Jaculus jaculus | 25180 | 25501 | 5927 | 5188 |
| Dipodomys ordii | Kangaroo rat (Ord's kangaroo rat) | 23962 | 24276 | 8284 | 8674 |
| Petromyzon marinus | Lamprey (sea lamprey) | 11442 | 11489 | 1233 | 1292 |
| Echinops telfairi | Lesser hedgehog tenrec (small Madagascar hedgehog) | 16575 | 20399 | 0 | 0 |
| Macaca mulatta | Macaque (rhesus monkey) | 48770 | 49537 | 0 | 0 |
| Callithrix jacchus | Marmoset (white-tufted-ear marmoset) | 48683 | 49978 | 28841 | 22906 |
| Oryzias latipes | Medaka (Japanese medaka) | 37468 | 37495 | 19112 | 18205 |
| Pteropus vampyrus | Megabat (large flying fox) | 17053 | 18086 | 0 | 0 |
| Mesocricetus auratus | Mesocricetus auratus | 25910 | 26216 | 10139 | 10573 |
| Myotis lucifugus | Microbat (little brown bat) | 20719 | 22432 | 1367 | 1552 |
| Microtus ochrogaster | Microtus ochrogaster | 27611 | 28140 | 12200 | 12462 |