| Mus musculus | Mouse (house mouse) | 67172 | 117497 | 0 | 0 |
| Microcebus murinus | Mouse Lemur (gray mouse lemur) | 35691 | 35899 | 12111 | 10755 |
| Mus caroli | Mus caroli | 50492 | 82223 | 0 | 0 |
| Mus musculus c57bl6nj | Mus musculus | 52383 | 86831 | 0 | 0 |
| Mus musculus wsbeij | Mus musculus | 51502 | 84851 | 0 | 0 |
| Mus musculus lpj | Mus musculus | 52060 | 85907 | 0 | 0 |
| Mus musculus dba2j | Mus musculus | 52057 | 85961 | 0 | 0 |
| Mus musculus pwkphj | Mus musculus | 52971 | 85856 | 0 | 0 |
| Mus musculus casteij | Mus musculus | 53281 | 86476 | 0 | 0 |
| Mus musculus nodshiltj | Mus musculus | 51974 | 85723 | 0 | 0 |
| Mus musculus aj | Mus musculus | 52196 | 86228 | 0 | 0 |
| Mus musculus akrj | Mus musculus | 52193 | 86159 | 0 | 0 |
| Mus musculus nzohlltj | Mus musculus | 52538 | 86995 | 0 | 0 |
| Mus musculus fvbnj | Mus musculus | 51898 | 85607 | 0 | 0 |
| Mus musculus c3hhej | Mus musculus | 51971 | 60588 | 0 | 0 |
| Mus musculus balbcj | Mus musculus | 52145 | 86137 | 0 | 0 |
| Mus musculus 129s1svimj | Mus musculus | 52191 | 86152 | 0 | 0 |
| Mus pahari | Mus pahari | 50002 | 80613 | 0 | 0 |
| Mus spretus spreteij | Mus spretus | 52646 | 85546 | 0 | 0 |
| Nannospalax galili | Nannospalax galili | 26872 | 27238 | 11344 | 11786 |
| Notamacropus eugenii | Notamacropus eugenii | 15342 | 16838 | 0 | 0 |
| Octodon degus | Octodon degus | 27047 | 27628 | 5809 | 4987 |
| Papio anubis | Olive baboon | 20977 | 21697 | 9894 | 6563 |
| Monodelphis domestica | Opossum (gray short-tailed opossum) | 36557 | 37423 | 19008 | 18866 |
| Pongo abelii | Orangutan (Bornean orangutan) | 38110 | 38523 | 21859 | 24835 |
| Ailuropoda melanoleuca | Panda (giant panda) | 39310 | 39893 | 21051 | 19427 |
| Peromyscus maniculatus bairdii | Peromyscus maniculatus | 28171 | 28891 | 7 | 8 |
| Sus scrofa | Pig | 49859 | 51485 | 0 | 0 |
| Ochotona princeps | Pika (American pika) | 16006 | 17333 | 0 | 0 |
| Xiphophorus maculatus | Platyfish (southern platyfish) | 36613 | 36651 | 19937 | 18156 |
| Ornithorhynchus anatinus | Platypus | 32939 | 33146 | 19589 | 18644 |
| Oryctolagus cuniculus | Rabbit | 41055 | 41711 | 18531 | 21052 |
| Rattus norvegicus | Rat (Norway rat) | 29107 | 31715 | 0 | 0 |
| Saccharomyces cerevisiae | Saccharomyces cerevisiae | 6600 | 6612 | 4 | 0 |
| Ovis aries | Sheep (Domestic sheep) | 22823 | 23113 | 0 | 0 |
| Sorex araneus | Shrew (European shrew) | 13192 | 14581 | 0 | 0 |
| Choloepus hoffmanni | Sloth (Hoffmann's two-fingered sloth) | 12435 | 14072 | 0 | 0 |
| Lepisosteus oculatus | Spotted gar | 22483 | 22525 | 12303 | 10979 |
| Ictidomys tridecemlineatus | Squirrel (thirteen-lined ground squirrel) | 25958 | 26267 | 0 | 0 |
| Gasterosteus aculeatus | Stickleback (three-spined stickleback) | 27576 | 27628 | 11966 | 9649 |
| Tarsius syrichta | Tarsier (Philippine tarsier) | 13675 | 14912 | 0 | 0 |
| Sarcophilus harrisii | Tasmanian devil | 37202 | 37458 | 0 | 0 |
| Tetraodon nigroviridis | Tetraodon (spotted green pufferfish) | 23118 | 23265 | 3301 | 3767 |
| Oreochromis niloticus | Tilapia (Nile tilapia) | 26763 | 26788 | 11270 | 9731 |
| Tupaia belangeri | Tree Shrew (northern tree shrew) | 15475 | 17788 | 0 | 0 |
| Meleagris gallopavo | Turkey (domestic turkey) | 16494 | 16618 | 3555 | 4710 |
| Chlorocebus sabaeus | Vervet-AGM (African green monkey) | 19255 | 19830 | 11144 | 9723 |
| Macropus eugenii | Wallaby (tammar wallaby) | 15342 | 16838 | 0 | 0 |
| Xenopus tropicalis | Xenopus (western clawed frog) | 54852 | 54933 | 0 | 0 |
| Taeniopygia guttata | Zebra Finch | 32098 | 32230 | 24487 | 26929 |