| Pythium irregulare | Pythium irregulare | 13805 | 13811 | 1002 | 722 |
| Pythium iwayamai | Pythium iwayamai | 15249 | 15264 | 1863 | 1272 |
| Pythium ultimum | Pythium ultimum | 15322 | 15335 | 0 | 0 |
| Pythium vexans | Pythium vexans | 11958 | 11958 | 835 | 562 |
| Reticulomyxa filosa | Reticulomyxa filosa | 39963 | 39963 | 14 | 12 |
| Salpingoeca rosetta | Salpingoeca rosetta | 11731 | 11737 | 7737 | 7273 |
| Saprolegnia diclina vs20 | Saprolegnia diclina VS20 | 18229 | 18245 | 11968 | 12628 |
| Saprolegnia parasitica cbs 223 65 | Saprolegnia parasitica CBS 223.65 | 20121 | 20163 | 8352 | 8814 |
| Sphaeroforma arctica jp610 | Sphaeroforma arctica | 18730 | 18748 | 9092 | 7528 |
| Spironucleus salmonicida | Spironucleus salmonicida | 8333 | 8333 | 0 | 0 |
| Strigomonas culicis | Strigomonas culicis | 12083 | 12083 | 0 | 0 |
| Stylonychia lemnae | Stylonychia lemnae | 20740 | 20740 | 0 | 0 |
| Tetrahymena thermophila | Tetrahymena thermophila | 24725 | 24728 | 0 | 0 |
| Thalassiosira oceanica | Thalassiosira oceanica | 34500 | 34500 | 5371 | 0 |
| Thalassiosira oceanica ccmp1005 | Thalassiosira oceanica CCMP1005 | 142 | 142 | 0 | 0 |
| Thalassiosira pseudonana | Thalassiosira pseudonana | 11673 | 11772 | 1726 | 3536 |
| Thecamonas trahens atcc 50062 | Thecamonas trahens ATCC 50062 | 10626 | 10626 | 4084 | 5516 |
| Theileria annulata | Theileria annulata | 3795 | 3796 | 3 | 0 |
| Theileria equi strain wa | Theileria equi | 5329 | 5329 | 1198 | 855 |
| Theileria orientalis strain shintoku | Theileria orientalis strain Shintoku | 4002 | 4002 | 1 | 0 |
| Theileria parva | Theileria parva | 4079 | 4079 | 765 | 649 |
| Toxoplasma gondii | Toxoplasma gondii | 7988 | 8024 | 2737 | 3719 |
| Toxoplasma gondii tgcatprc2 | Toxoplasma gondii | 10121 | 10121 | 924 | 2 |
| Toxoplasma gondii ari | Toxoplasma gondii | 9958 | 9958 | 772 | 1 |
| Toxoplasma gondii fou | Toxoplasma gondii FOU | 10117 | 10117 | 739 | 4 |
| Toxoplasma gondii gab2 2007 gal dom2 | Toxoplasma gondii GAB2-2007-GAL-DOM2 | 9136 | 9136 | 401 | 3 |
| Toxoplasma gondii gt1 | Toxoplasma gondii GT1 | 8460 | 8460 | 118 | 4 |
| Toxoplasma gondii mas | Toxoplasma gondii MAS | 10005 | 10005 | 736 | 1 |
| Toxoplasma gondii p89 | Toxoplasma gondii p89 | 9701 | 9701 | 617 | 1 |
| Toxoplasma gondii rub | Toxoplasma gondii RUB | 10027 | 10027 | 769 | 2 |
| Toxoplasma gondii vand | Toxoplasma gondii VAND | 9255 | 9255 | 454 | 2 |
| Toxoplasma gondii veg | Toxoplasma gondii VEG | 8410 | 8410 | 103 | 2 |
| Trichomonas vaginalis g3 | Trichomonas vaginalis G3 | 59681 | 59681 | 3901 | 5111 |
| Trypanosoma brucei | Trypanosoma brucei | 8747 | 8773 | 2 | 0 |
| Trypanosoma brucei brucei treu927 | Trypanosoma brucei | 8758 | 8784 | 4 | 4 |
| Trypanosoma cruzi | Trypanosoma cruzi | 19607 | 19607 | 1079 | 2 |
| Trypanosoma cruzi dm28c | Trypanosoma cruzi Dm28c | 11348 | 11348 | 0 | 0 |
| Trypanosoma cruzi gca 000188675 | Trypanosoma cruzi (GCA_000188675) | 10847 | 10847 | 0 | 0 |
| Trypanosoma cruzi marinkellei | Trypanosoma cruzi marinkellei | 10104 | 10104 | 0 | 0 |
| Trypanosoma rangeli sc58 | Trypanosoma rangeli SC58 | 7475 | 7475 | 0 | 0 |
| Vitrella brassicaformis ccmp3155 | Vitrella brassicaformis CCMP3155 | 23034 | 23412 | 9502 | 9914 |